PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G087900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 489aa    MW: 54527.4 Da    PI: 7.3329
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G087900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12305351455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr+++P+       K++K++ L  Av YI++L+
  Prupe.5G087900.1.p 305 NHVEAERQRREKLNHRFYVLRSVVPNV-----SKMDKSSLLADAVSYINQLK 351
                         699***********************6.....5*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.8E-3722212IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474594.58E-18299365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.71E-15299355No hitNo description
PROSITE profilePS5088816.825301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-10305350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-17305363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-16307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MEEIISSCSS PNFGPENPAI FQQRLQFLVQ NRPECWVYSI FWRASKDSNG QVALSWGAGD  60
FQIDRDLATK TTNKVTNNYQ PKFGLTKKMT SREAEEALFN EDMVDLEMRL VDHGDVTGSE  120
WFYFYSVSLT QSFAAGHATN NILGRAFCSG GFVWLAGVHE LQFYECERVK EARMHGIQTL  180
VCIATSCGVL ELASVDVIKE DRGLVHLSMS LFGSNNNRVS QQGSRDGDVL VPSLENGKFL  240
GVQKELTRQE CGRKEVAPIN IGGLSPESPS DSIGNFTSEN IAKPRSKKRG RSSTNGASRE  300
SALLNHVEAE RQRREKLNHR FYVLRSVVPN VSKMDKSSLL ADAVSYINQL KAKVEELEAK  360
IQEQPPTPKT GSVSHLDHHL SQSSSSIGDS HHHHHHHHSS YNSRTVVPVE MDVKIMGSEA  420
IIRVQCPDQD YPYARLMNAL KGLGLQVYHA SISSVKELMI QDVVARVPYG FSSDQEAMRT  480
AIMKRWHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-23112152195Transcription factor MYC3
4rqw_B1e-23112152195Transcription factor MYC3
4rs9_A1e-23112152195Transcription factor MYC3
4yz6_A1e-23112152195Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008238769.10.0PREDICTED: transcription factor MYC2-like
TrEMBLM5WDE30.0M5WDE3_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.13e-55bHLH family protein