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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.5G087900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 489aa MW: 54527.4 Da PI: 7.3329 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.5 | 1e-12 | 305 | 351 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr+++P+ K++K++ L Av YI++L+ Prupe.5G087900.1.p 305 NHVEAERQRREKLNHRFYVLRSVVPNV-----SKMDKSSLLADAVSYINQLK 351 699***********************6.....5*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 9.8E-37 | 22 | 212 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 4.58E-18 | 299 | 365 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.71E-15 | 299 | 355 | No hit | No description |
PROSITE profile | PS50888 | 16.825 | 301 | 350 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-10 | 305 | 350 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-17 | 305 | 363 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.4E-16 | 307 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 489 aa Download sequence Send to blast |
MEEIISSCSS PNFGPENPAI FQQRLQFLVQ NRPECWVYSI FWRASKDSNG QVALSWGAGD 60 FQIDRDLATK TTNKVTNNYQ PKFGLTKKMT SREAEEALFN EDMVDLEMRL VDHGDVTGSE 120 WFYFYSVSLT QSFAAGHATN NILGRAFCSG GFVWLAGVHE LQFYECERVK EARMHGIQTL 180 VCIATSCGVL ELASVDVIKE DRGLVHLSMS LFGSNNNRVS QQGSRDGDVL VPSLENGKFL 240 GVQKELTRQE CGRKEVAPIN IGGLSPESPS DSIGNFTSEN IAKPRSKKRG RSSTNGASRE 300 SALLNHVEAE RQRREKLNHR FYVLRSVVPN VSKMDKSSLL ADAVSYINQL KAKVEELEAK 360 IQEQPPTPKT GSVSHLDHHL SQSSSSIGDS HHHHHHHHSS YNSRTVVPVE MDVKIMGSEA 420 IIRVQCPDQD YPYARLMNAL KGLGLQVYHA SISSVKELMI QDVVARVPYG FSSDQEAMRT 480 AIMKRWHS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 1e-23 | 11 | 215 | 2 | 195 | Transcription factor MYC3 |
4rqw_B | 1e-23 | 11 | 215 | 2 | 195 | Transcription factor MYC3 |
4rs9_A | 1e-23 | 11 | 215 | 2 | 195 | Transcription factor MYC3 |
4yz6_A | 1e-23 | 11 | 215 | 2 | 195 | Transcription factor MYC3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008238769.1 | 0.0 | PREDICTED: transcription factor MYC2-like | ||||
TrEMBL | M5WDE3 | 0.0 | M5WDE3_PRUPE; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF841 | 34 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 3e-55 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.5G087900.1.p |